MTOR kinase activity relative to DMSO was determined by measuring 33P incorporation on its substrate (poly[Glu,Tyr]4:1) by Reaction Biology Corp., USA.
eCF309 was tested at 10 different doses with 3-fold serial dilution starting from 10 μM.
Structure-activity relationship:
Analysis of the kinase inhibition profile of eCF309 and several analogues indicated that the presence of oxygen atoms in the alkyl group at the position N1 of the pyrazolopyrimidine ring results in increased mTOR selectivity.
Kinome profiling of eCF309 against 375 wild type and mutant kinases was performed at 10 μM. mTOR was the only protein inhibited >99%.The activity of five kinases was inhibited between 65-90%: DDR1, DNA-PK, PI3Kγ and PI3Kα(E545K).
S-score (35) = 0.01
In cell validation
Potency in cells:
IC50EC50
<30nM8-72 nM
Potency assay (cells):
To verify that eCF309 inhibits both mTORC1 and mTORC2 signalling in cells by inhibition of the mTOR catalytic domain, phosphorylation of downstream targets of both complexes were assessed in MCF7 breast cancer cells by Western blot. Phosphorylation levels of the p70 ribosomal S6 kinase 1 (P70S6K) and its substrate S6 were analysed as substrates of mTORC1, and phospho-AKT (Y473) as an mTORC2 substrate. eCF309 mediated a dose-dependent reduction of the pP70S6K, pS6 and pAKT levels in MCF7 cells, achieving almost complete inhibition of the phosphorylation of these targets at 30 nM.
Antiproliferative activity of eCF309 against cancer cell lines was also evaluated using the PrestoBlue reagent. EC50 = 8 nM in MCF7 cells, 37 nM in PC3 cells; 72 nM in MDA-MB-231 cells. As expected by an mTOR inhibitor, eCF309 reduced cell proliferation in these cell lines by cell cycle arrest.
Target engagement assay (cells):
Indirect, inhibition of protein substrate phosphorylation.