All PARP enzyme assays were done by following the BPS PARP assay kit protocols.
PDB ID for probe-target interaction (3D structure):
5EBT
Structure-activity relationship:
Yes
Potency (off target):
IC50
Off target protein and potency:
PARP3 2.8 uMTNKS 2.3 uMTNKS2 <3 uM
Potency assay (off target):
AZ0108 inhibits PARPs 1, 2, and 6 with approximately 100-fold selectivity against PARP3 and TNKS1, and it is not active in a DLD-1 Wnt luciferase reporter assay.
Probe Selectivity in Vitro:
Not available
In cell validation
Potency in cells:
EC50
0.053 uM
Potency assay (cells):
EC50s were measured in a high-content phenotypic assay that was also used to screen for small molecules that block centrosome clustering and cause a multi-polar spindle phenotype.
This cell-based centrosome declustering assay begins with treatment of HeLa cells with increasing concentrations of compound. After 24 h, the cells are fixed and then the mitotic cells are identified
by treatment with a cyclin B antibody. Next, the cells are treated with an antibody towards pericentrin to label the centrosomes. After that, an automated process generates an overlay of the two
images and analyzes it to calculate the number of centrosomes observed in each mitotic cell. Mitotic cells with greater than four centrosomes are then assumed to have a multi-polar spindle phenotype Finally, a declustering EC50 is calculated from a doseresponse
curve generated from a plot of the percentage of mitotic cells with a multi-polar spindle phenotype at eight concentrations ranging from 3 nM to 10 uM.